IL_4V7E_201
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_201 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1956
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V7E|1|Ad|C|631
4V7E|1|Ad|G|632
4V7E|1|Ad|U|633
4V7E|1|Ad|A|634
4V7E|1|Ad|G|635
*
4V7E|1|Ad|U|973
4V7E|1|Ad|C|974
4V7E|1|Ad|A|975
4V7E|1|Ad|A|976
4V7E|1|Ad|G|977
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL
- 40S ribosomal protein S17
- Chain BN
- 40S ribosomal protein S15
- Chain BX
- 40S ribosomal protein S12
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