IL_4V7E_211

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

4V7E|1|Ad|G|881

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_211 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1402

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V7E|1|Ad|C|879
4V7E|1|Ad|G|880
4V7E|1|Ad|G|881
4V7E|1|Ad|G|882
4V7E|1|Ad|G|883
*
4V7E|1|Ad|C|955
4V7E|1|Ad|A|956
4V7E|1|Ad|A|957
4V7E|1|Ad|G|958

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S1E

Chain BN

40S ribosomal protein S15

Chain Ba

40S ribosomal protein S26E

Chain Cc

60S ribosomal protein L30E