IL_4V7E_225

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCCU*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_225 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2275

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V7E|1|Ad|G|1177
4V7E|1|Ad|C|1178
4V7E|1|Ad|C|1179
4V7E|1|Ad|U|1180
*
4V7E|1|Ad|G|1470
4V7E|1|Ad|C|1471
4V7E|1|Ad|G|1472
4V7E|1|Ad|C|1473

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain BQ

40S ribosomal protein S9

Chain BS

40S ribosomal protein S13

Chain BT

40S ribosomal protein S19E

Chain BU

40S ribosomal protein S10

Chain BZ

40S ribosomal protein S25E