IL_4V7E_233

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGG*UCUGUCA

Length

10 nucleotides

Bulged bases

4V7E|1|Ad|C|1437, 4V7E|1|Ad|U|1438, 4V7E|1|Ad|C|1441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_233 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.1459

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|U|1280
4V7E|1|Ad|G|1281
4V7E|1|Ad|G|1282
*
4V7E|1|Ad|U|1436
4V7E|1|Ad|C|1437
4V7E|1|Ad|U|1438
4V7E|1|Ad|G|1439
4V7E|1|Ad|U|1440
4V7E|1|Ad|C|1441
4V7E|1|Ad|A|1442

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain BK

40S ribosomal protein S10E

Chain BU

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S14