IL_4V7I_036

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_036 not in the Motif Atlas

Geometric match to IL_5H1K_001

Geometric discrepancy: 0.2722

The information below is about IL_5H1K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4V7I|1|A8|G|881
4V7I|1|A8|G|882
4V7I|1|A8|G|883
*
4V7I|1|A8|C|893
4V7I|1|A8|U|894
4V7I|1|A8|U|895

Current chains

Chain A8

23S ribosomal RNA

Nearby chains