IL_4V7I_137

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

4V7I|1|BA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_137 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2777

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V7I|1|BA|A|371
4V7I|1|BA|C|372
4V7I|1|BA|A|373
4V7I|1|BA|A|374
4V7I|1|BA|U|375
4V7I|1|BA|G|376
*
4V7I|1|BA|U|387
4V7I|1|BA|G|388
4V7I|1|BA|A|389
4V7I|1|BA|U|390

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20