IL_4V7I_154

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V7I|1|BA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_154 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2427

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V7I|1|BA|U|684
4V7I|1|BA|G|685
4V7I|1|BA|U|686
4V7I|1|BA|A|687
4V7I|1|BA|G|688
*
4V7I|1|BA|C|699
4V7I|1|BA|G|700
4V7I|1|BA|U|701
4V7I|1|BA|A|702
4V7I|1|BA|G|703
4V7I|1|BA|A|704
4V7I|1|BA|G|705
4V7I|1|BA|A|706

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain A8

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S ribosomal protein S11