IL_4V7I_184

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_184 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.2921

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V7I|1|BA|A|1430
4V7I|1|BA|A|1431
4V7I|1|BA|G|1432
4V7I|1|BA|A|1433
4V7I|1|BA|A|1434
4V7I|1|BA|G|1435
*
4V7I|1|BA|C|1466
4V7I|1|BA|C|1467
4V7I|1|BA|A|1468
4V7I|1|BA|C|1469
4V7I|1|BA|U|1470

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain A8

Large subunit ribosomal RNA; LSU rRNA

Chain AP

50S ribosomal protein L19