IL_4V7I_187

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UAAG*CGUUAUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_187 not in the Motif Atlas

Geometric match to IL_1U63_003

Geometric discrepancy: 0.3161

The information below is about IL_1U63_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V7I|1|A8|U|82
4V7I|1|A8|A|83
4V7I|1|A8|A|84
4V7I|1|A8|G|85
*
4V7I|1|A8|C|97
4V7I|1|A8|G|98
4V7I|1|A8|U|99
4V7I|1|A8|U|100
4V7I|1|A8|A|101
4V7I|1|A8|U|102
4V7I|1|A8|A|103
4V7I|1|A8|A|104

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L24

Chain AY

50S ribosomal protein L29