IL_4V7J_331

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V7J|1|Ba|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_331 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0729

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V7J|1|Ba|G|662
4V7J|1|Ba|A|663
4V7J|1|Ba|G|664
4V7J|1|Ba|A|665
4V7J|1|Ba|G|666
*
4V7J|1|Ba|U|740
4V7J|1|Ba|G|741
4V7J|1|Ba|G|742
4V7J|1|Ba|U|743

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bf

30S ribosomal protein S6

Chain Bo

30S ribosomal protein S15

Chain Br

30S ribosomal protein S18