3D structure

PDB id
4V7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of Capreomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7M_030 not in the Motif Atlas
Homologous match to IL_5J7L_034
Geometric discrepancy: 0.0665
The information below is about IL_5J7L_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

4V7M|1|AA|G|673
4V7M|1|AA|G|674
4V7M|1|AA|A|675
4V7M|1|AA|A|676
4V7M|1|AA|U|677
4V7M|1|AA|U|678
*
4V7M|1|AA|A|712
4V7M|1|AA|G|713
4V7M|1|AA|G|714
4V7M|1|AA|A|715
4V7M|1|AA|A|716
4V7M|1|AA|C|717

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AF
30S ribosomal protein S6
Chain AK
30S ribosomal protein S11
Chain AR
30S ribosomal protein S18
Chain BD
50S ribosomal protein L2

Coloring options:


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