IL_4V7M_295

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGCAAU*AGCG

Length

10 nucleotides

Bulged bases

4V7M|1|DA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_295 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.2021

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V7M|1|DA|C|1318
4V7M|1|DA|G|1319
4V7M|1|DA|C|1320
4V7M|1|DA|A|1321
4V7M|1|DA|A|1322
4V7M|1|DA|U|1323
*
4V7M|1|DA|A|1331
4V7M|1|DA|G|1332
4V7M|1|DA|C|1333
4V7M|1|DA|G|1334

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DX

50S ribosomal protein L23