IL_4V7R_046

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

4V7R|1|A1|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_046 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1375

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V7R|1|A1|C|874
4V7R|1|A1|G|875
4V7R|1|A1|G|876
4V7R|1|A1|G|877
4V7R|1|A1|G|878
*
4V7R|1|A1|C|950
4V7R|1|A1|A|951
4V7R|1|A1|A|952
4V7R|1|A1|G|953

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S13

Chain Ac

Unassigned secondary structure