3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CUUAGUAA*UGAAGCG
Length
15 nucleotides
Bulged bases
4V7R|1|B1|C|102
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_096 not in the Motif Atlas
Homologous match to IL_5TBW_006
Geometric discrepancy: 0.4895
The information below is about IL_5TBW_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88613.1
Basepair signature
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
2

Unit IDs

4V7R|1|B1|C|82
4V7R|1|B1|U|83
4V7R|1|B1|U|84
4V7R|1|B1|A|85
4V7R|1|B1|G|86
4V7R|1|B1|U|87
4V7R|1|B1|A|88
4V7R|1|B1|A|89
*
4V7R|1|B1|U|97
4V7R|1|B1|G|98
4V7R|1|B1|A|99
4V7R|1|B1|A|100
4V7R|1|B1|G|101
4V7R|1|B1|C|102
4V7R|1|B1|G|103

Current chains

Chain B1
25S ribosomal RNA

Nearby chains

Chain BO
60S ribosomal protein L15-A
Chain BY
60S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3615 s
Application loaded.