IL_4V7R_105
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- GCGA*UCGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GCGA,UCGC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7R_105 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2944
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V7R|1|B1|G|331
4V7R|1|B1|C|332
4V7R|1|B1|G|333
4V7R|1|B1|A|334
*
4V7R|1|B3|U|29
4V7R|1|B3|C|30
4V7R|1|B3|G|31
4V7R|1|B3|C|32
Current chains
- Chain B1
- 25S ribosomal RNA
- Chain B3
- 5.8S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L4-A
- Chain BX
- 60S ribosomal protein L26-A
- Chain Bd
- 60S ribosomal protein L37-A
- Chain Bq
- Unassigned secondary structure
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