IL_4V7R_219

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAGU*AUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_219 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2893

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V7R|1|B1|C|2832
4V7R|1|B1|A|2833
4V7R|1|B1|G|2834
4V7R|1|B1|U|2835
*
4V7R|1|B1|A|2853
4V7R|1|B1|U|2854
4V7R|1|B1|U|2855
4V7R|1|B1|G|2856

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain BJ

60S ribosomal protein L10