IL_4V7R_229

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUAGUAC*GGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_229 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2282

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7R|1|B1|C|3018
4V7R|1|B1|U|3019
4V7R|1|B1|U|3020
4V7R|1|B1|A|3021
4V7R|1|B1|G|3022
4V7R|1|B1|U|3023
4V7R|1|B1|A|3024
4V7R|1|B1|C|3025
*
4V7R|1|B1|G|3030
4V7R|1|B1|G|3031
4V7R|1|B1|A|3032
4V7R|1|B1|A|3033
4V7R|1|B1|C|3034
4V7R|1|B1|A|3035
4V7R|1|B1|G|3036

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L3

Chain BI

60S ribosomal protein L9-A

Chain BU

60S ribosomal protein L23