IL_4V7R_230

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

4V7R|1|B1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_230 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.2192

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V7R|1|B1|U|3047
4V7R|1|B1|A|3048
4V7R|1|B1|A|3049
4V7R|1|B1|U|3050
4V7R|1|B1|U|3051
*
4V7R|1|B1|A|3091
4V7R|1|B1|C|3092
4V7R|1|B1|C|3093
4V7R|1|B1|A|3094

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L3

Chain BU

60S ribosomal protein L23

Chain BV

60S ribosomal protein L24-A