IL_4V7R_264

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

4V7R|1|C1|C|114, 4V7R|1|C1|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_264 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2126

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V7R|1|C1|U|113
4V7R|1|C1|C|114
4V7R|1|C1|G|115
4V7R|1|C1|U|116
*
4V7R|1|C1|A|300
4V7R|1|C1|A|301

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CF

40S ribosomal protein S11