3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
4V7R|1|C1|A|579, 4V7R|1|C1|U|581, 4V7R|1|C1|U|582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_286 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.2032
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4V7R|1|C1|G|562
4V7R|1|C1|U|563
4V7R|1|C1|G|564
4V7R|1|C1|C|565
4V7R|1|C1|C|566
4V7R|1|C1|A|567
4V7R|1|C1|G|568
*
4V7R|1|C1|C|575
4V7R|1|C1|G|576
4V7R|1|C1|G|577
4V7R|1|C1|U|578
4V7R|1|C1|A|579
4V7R|1|C1|A|580
4V7R|1|C1|U|581
4V7R|1|C1|U|582
4V7R|1|C1|C|583

Current chains

Chain C1
18S ribosomal RNA

Nearby chains

Chain CC
40S ribosomal protein S3
Chain CP
40S ribosomal protein S23

Coloring options:


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