IL_4V7R_305

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_305 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1445

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V7R|1|C1|C|990
4V7R|1|C1|G|991
4V7R|1|C1|A|992
4V7R|1|C1|A|993
4V7R|1|C1|G|994
*
4V7R|1|C1|C|1010
4V7R|1|C1|G|1011
4V7R|1|C1|U|1012
4V7R|1|C1|A|1013
4V7R|1|C1|G|1014

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CH

40S ribosomal protein S14-A

Chain D1

Large subunit ribosomal RNA; LSU rRNA