3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CGCU*AAAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_339 not in the Motif Atlas
Geometric match to IL_4V88_466
Geometric discrepancy: 0.3928
The information below is about IL_4V88_466
Detailed Annotation
Non canonical cWW and near pair
Broad Annotation
Non canonical cWW and near pair
Motif group
IL_90170.1
Basepair signature
cWW-L-R-L-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V7R|1|C1|C|1644
4V7R|1|C1|G|1645
4V7R|1|C1|C|1646
4V7R|1|C1|U|1647
*
4V7R|1|C1|A|1753
4V7R|1|C1|A|1754
4V7R|1|C1|A|1755
4V7R|1|C1|A|1756
4V7R|1|C1|G|1757

Current chains

Chain C1
18S ribosomal RNA

Nearby chains

Chain CP
40S ribosomal protein S23
Chain D1
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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