IL_4V7R_393

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAGGUAA*UAAAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_393 not in the Motif Atlas

Geometric match to IL_5TBW_038

Geometric discrepancy: 0.1554

The information below is about IL_5TBW_038

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93830.3

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V7R|1|D1|G|991
4V7R|1|D1|A|992
4V7R|1|D1|G|993
4V7R|1|D1|G|994
4V7R|1|D1|U|995
4V7R|1|D1|A|996
4V7R|1|D1|A|997
*
4V7R|1|D1|U|1052
4V7R|1|D1|A|1053
4V7R|1|D1|A|1054
4V7R|1|D1|A|1055
4V7R|1|D1|U|1056
4V7R|1|D1|A|1057
4V7R|1|D1|U|1058

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain D2

5S ribosomal RNA; 5S rRNA

Chain DG

60S ribosomal protein L7-A

Chain DT

60S ribosomal protein L21-A