IL_4V7R_405

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUAAG*CUAUA

Length

10 nucleotides

Bulged bases

4V7R|1|D1|U|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_405 not in the Motif Atlas

Homologous match to IL_5TBW_048

Geometric discrepancy: 0.1539

The information below is about IL_5TBW_048

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

4V7R|1|D1|U|1167
4V7R|1|D1|U|1168
4V7R|1|D1|A|1169
4V7R|1|D1|A|1170
4V7R|1|D1|G|1171
*
4V7R|1|D1|C|1328
4V7R|1|D1|U|1329
4V7R|1|D1|A|1330
4V7R|1|D1|U|1331
4V7R|1|D1|A|1332

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain D2

5S ribosomal RNA; 5S rRNA

Chain DG

60S ribosomal protein L7-A

Chain Db

60S ribosomal protein L32