3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
UUUUUG*CGAAG
Length
11 nucleotides
Bulged bases
4V7R|1|D1|U|3056, 4V7R|1|D1|U|3058
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_480 not in the Motif Atlas
Homologous match to IL_8C3A_127
Geometric discrepancy: 0.1885
The information below is about IL_8C3A_127
Detailed Annotation
UAA/GAN related
Broad Annotation
UAA/GAN related
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

4V7R|1|D1|U|3054
4V7R|1|D1|U|3055
4V7R|1|D1|U|3056
4V7R|1|D1|U|3057
4V7R|1|D1|U|3058
4V7R|1|D1|G|3059
*
4V7R|1|D1|C|3084
4V7R|1|D1|G|3085
4V7R|1|D1|A|3086
4V7R|1|D1|A|3087
4V7R|1|D1|G|3088

Current chains

Chain D1
25S ribosomal RNA

Nearby chains

Chain DC
60S ribosomal protein L3
Chain DV
60S ribosomal protein L24-A
Chain Da
60S ribosomal protein L31-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.1456 s
Application loaded.