IL_4V7R_482

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4V7R|1|D1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_482 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.1844

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

4V7R|1|D1|A|3103
4V7R|1|D1|U|3104
4V7R|1|D1|U|3105
4V7R|1|D1|A|3106
4V7R|1|D1|U|3107
*
4V7R|1|D1|A|3127
4V7R|1|D1|G|3128
4V7R|1|D1|A|3129
4V7R|1|D1|A|3130
4V7R|1|D1|U|3131

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L9-A

Chain DP

60S ribosomal protein L16-A