IL_4V7R_538

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

4V7R|1|B1|C|1391, 4V7R|1|B1|A|1393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_538 not in the Motif Atlas

Homologous match to IL_8P9A_287

Geometric discrepancy: 0.2359

The information below is about IL_8P9A_287

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V7R|1|B1|U|1388
4V7R|1|B1|G|1389
4V7R|1|B1|A|1390
4V7R|1|B1|C|1391
4V7R|1|B1|G|1392
4V7R|1|B1|A|1393
4V7R|1|B1|A|1394
4V7R|1|B1|G|1395
*
4V7R|1|B1|U|1415
4V7R|1|B1|C|1416
4V7R|1|B1|G|1417
4V7R|1|B1|A|1418
4V7R|1|B1|A|1419

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain BD

60S ribosomal protein L4-A

Chain Bb

60S ribosomal protein L32