IL_4V8E_263

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V8E|1|CA|A|1961, 4V8E|1|CA|U|1967, 4V8E|1|CA|U|1986

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_263 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1291

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|C|1957
4V8E|1|CA|G|1958
4V8E|1|CA|A|1959
4V8E|1|CA|A|1960
4V8E|1|CA|A|1961
4V8E|1|CA|U|1962
4V8E|1|CA|U|1963
4V8E|1|CA|C|1964
4V8E|1|CA|C|1965
4V8E|1|CA|U|1966
4V8E|1|CA|U|1967
4V8E|1|CA|G|1968
*
4V8E|1|CA|C|1984
4V8E|1|CA|C|1985
4V8E|1|CA|U|1986
4V8E|1|CA|G|1987

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DB

TRNA-TYR