IL_4V8E_293

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_293 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1486

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V8E|1|CA|U|2700
4V8E|1|CA|U|2701
4V8E|1|CA|U|2702
4V8E|1|CA|C|2703
4V8E|1|CA|C|2704
*
4V8E|1|CA|G|2732
4V8E|1|CA|G|2733
4V8E|1|CA|U|2734
4V8E|1|CA|A|2735
4V8E|1|CA|G|2736

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain CE

50S ribosomal protein L3

Chain CR

50S ribosomal protein L19