IL_4V8J_011

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V8J|1|AA|U|239, 4V8J|1|AA|C|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0904

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V8J|1|AA|C|237
4V8J|1|AA|A|238
4V8J|1|AA|U|239
4V8J|1|AA|C|240
4V8J|1|AA|A|241
4V8J|1|AA|G|242
*
4V8J|1|AA|C|272
4V8J|1|AA|G|273
4V8J|1|AA|A|274
4V8J|1|AA|C|275
4V8J|1|AA|G|276
4V8J|1|AA|A|277
4V8J|1|AA|C|278
4V8J|1|AA|G|279

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17