IL_4V8J_021
3D structure
- PDB id
- 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome ram mutation G347U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V8J|1|AA|A|515, 4V8J|1|AA|U|517, 4V8J|1|AA|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8J_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1542
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8J|1|AA|G|498
4V8J|1|AA|U|499
4V8J|1|AA|G|500
4V8J|1|AA|C|501
4V8J|1|AA|C|502
4V8J|1|AA|A|503
4V8J|1|AA|G|504
*
4V8J|1|AA|C|511
4V8J|1|AA|G|512
4V8J|1|AA|G|513
4V8J|1|AA|U|514
4V8J|1|AA|A|515
4V8J|1|AA|A|516
4V8J|1|AA|U|517
4V8J|1|AA|A|518
4V8J|1|AA|C|519
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AL
- 30S ribosomal protein S12
- Chain AX
- messenger RNA
- Chain AY
- Transfer RNA; tRNA
Coloring options: