IL_4V8J_052

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_052 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.098

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8J|1|AA|C|1284
4V8J|1|AA|G|1285
4V8J|1|AA|G|1286
4V8J|1|AA|A|1287
4V8J|1|AA|U|1288
4V8J|1|AA|U|1289
*
4V8J|1|AA|A|1310
4V8J|1|AA|U|1311
4V8J|1|AA|G|1312
4V8J|1|AA|A|1313
4V8J|1|AA|A|1314
4V8J|1|AA|G|1315

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein THX