IL_4V8J_212

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_212 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0941

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8J|1|CA|G|864
4V8J|1|CA|G|865
4V8J|1|CA|A|866
4V8J|1|CA|G|867
4V8J|1|CA|U|868
4V8J|1|CA|A|869
4V8J|1|CA|C|870
4V8J|1|CA|G|871
*
4V8J|1|CA|U|882
4V8J|1|CA|G|883
4V8J|1|CA|A|884
4V8J|1|CA|A|885
4V8J|1|CA|A|886
4V8J|1|CA|C|887

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17