IL_4V8P_003
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUGAACUU*AUCAGUAAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_003 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1674
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8P|1|A1|C|29
4V8P|1|A1|U|30
4V8P|1|A1|G|31
4V8P|1|A1|A|32
4V8P|1|A1|A|33
4V8P|1|A1|C|34
4V8P|1|A1|U|35
4V8P|1|A1|U|36
*
4V8P|1|A1|A|43
4V8P|1|A1|U|44
4V8P|1|A1|C|45
4V8P|1|A1|A|46
4V8P|1|A1|G|47
4V8P|1|A1|U|48
4V8P|1|A1|A|49
4V8P|1|A1|A|50
4V8P|1|A1|G|51
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain AU
- RPL13
- Chain BC
- RPL4
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BL
- RIBOSOMAL PROTEIN L15
Coloring options: