IL_4V8P_033

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAAG*UAGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_033 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.251

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V8P|1|A1|C|751
4V8P|1|A1|C|752
4V8P|1|A1|A|753
4V8P|1|A1|A|754
4V8P|1|A1|G|755
*
4V8P|1|A1|U|764
4V8P|1|A1|A|765
4V8P|1|A1|G|766
4V8P|1|A1|C|767
4V8P|1|A1|A|768
4V8P|1|A1|G|769

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AT

RPL29

Chain BN

RPL18