IL_4V8P_038
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V8P|1|A1|A|958, 4V8P|1|A1|G|962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_038 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.1267
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|A1|G|830
4V8P|1|A1|A|831
4V8P|1|A1|A|832
4V8P|1|A1|A|833
4V8P|1|A1|G|834
*
4V8P|1|A1|C|956
4V8P|1|A1|U|957
4V8P|1|A1|A|958
4V8P|1|A1|G|959
4V8P|1|A1|U|960
4V8P|1|A1|A|961
4V8P|1|A1|G|962
4V8P|1|A1|C|963
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AU
- RPL13
- Chain BC
- RPL4
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BL
- RIBOSOMAL PROTEIN L15
Coloring options: