IL_4V8P_043
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4V8P|1|A1|G|933, 4V8P|1|A1|A|945, 4V8P|1|A1|A|946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_043 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0867
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|A1|G|932
4V8P|1|A1|G|933
4V8P|1|A1|G|934
*
4V8P|1|A1|U|944
4V8P|1|A1|A|945
4V8P|1|A1|A|946
4V8P|1|A1|U|947
4V8P|1|A1|C|948
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain BA
- RPL8
- Chain BL
- RIBOSOMAL PROTEIN L15
- Chain BQ
- RPL17
Coloring options: