IL_4V8P_054

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

4V8P|1|A1|C|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_054 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.3767

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V8P|1|A1|G|1094
4V8P|1|A1|C|1095
4V8P|1|A1|G|1096
*
4V8P|1|A1|U|1117
4V8P|1|A1|C|1118

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BM

60S RIBOSOMAL PROTEIN L5

Chain BP

60S RIBOSOMAL PROTEIN L21