IL_4V8P_065
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 4V8P|1|A1|G|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_065 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0863
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8P|1|A1|C|1403
4V8P|1|A1|G|1404
4V8P|1|A1|U|1405
*
4V8P|1|A1|A|1454
4V8P|1|A1|G|1455
4V8P|1|A1|U|1456
4V8P|1|A1|G|1457
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AO
- RPL28
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- RPL4
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BX
- 60S RIBOSOMAL PROTEIN L32
Coloring options: