IL_4V8P_081
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UGAAAUU*AGAGAUA
- Length
- 14 nucleotides
- Bulged bases
- 4V8P|1|A1|U|1740, 4V8P|1|A1|A|1753
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_081 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.2559
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8P|1|A1|U|1735
4V8P|1|A1|G|1736
4V8P|1|A1|A|1737
4V8P|1|A1|A|1738
4V8P|1|A1|A|1739
4V8P|1|A1|U|1740
4V8P|1|A1|U|1741
*
4V8P|1|A1|A|1751
4V8P|1|A1|G|1752
4V8P|1|A1|A|1753
4V8P|1|A1|G|1754
4V8P|1|A1|A|1755
4V8P|1|A1|U|1756
4V8P|1|A1|A|1757
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AG
- RPL30
- Chain AL
- RPL34
- Chain AN
- RPL27
- Chain BO
- RPL19
- Chain BY
- RPL37A
Coloring options: