IL_4V8P_082
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_082 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.1264
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V8P|1|A1|A|1907
4V8P|1|A1|A|1908
4V8P|1|A1|C|1909
4V8P|1|A1|A|1910
4V8P|1|A1|A|1911
4V8P|1|A1|U|1912
4V8P|1|A1|G|1913
*
4V8P|1|A1|C|2341
4V8P|1|A1|U|2342
4V8P|1|A1|A|2343
4V8P|1|A1|U|2344
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BQ
- RPL17
- Chain BW
- 60S RIBOSOMAL PROTEIN L31
Coloring options: