IL_4V8P_122
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUUAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_122 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1131
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8P|1|A1|G|3007
4V8P|1|A1|U|3008
4V8P|1|A1|U|3009
4V8P|1|A1|A|3010
4V8P|1|A1|G|3011
4V8P|1|A1|U|3012
4V8P|1|A1|A|3013
4V8P|1|A1|C|3014
*
4V8P|1|A1|G|3019
4V8P|1|A1|G|3020
4V8P|1|A1|A|3021
4V8P|1|A1|A|3022
4V8P|1|A1|C|3023
4V8P|1|A1|A|3024
4V8P|1|A1|C|3025
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AJ
- TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN
- Chain AK
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BE
- 60S RIBOSOMAL PROTEIN L9
- Chain BJ
- RPL23
Coloring options: