IL_4V8P_124
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAAAUA*UGAAG
- Length
- 11 nucleotides
- Bulged bases
- 4V8P|1|A1|A|3045, 4V8P|1|A1|U|3047
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_124 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.2322
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V8P|1|A1|U|3043
4V8P|1|A1|A|3044
4V8P|1|A1|A|3045
4V8P|1|A1|A|3046
4V8P|1|A1|U|3047
4V8P|1|A1|A|3048
*
4V8P|1|A1|U|3073
4V8P|1|A1|G|3074
4V8P|1|A1|A|3075
4V8P|1|A1|A|3076
4V8P|1|A1|G|3077
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BT
- RPL24
- Chain BW
- 60S RIBOSOMAL PROTEIN L31
Coloring options: