IL_4V8P_126

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4V8P|1|A1|A|3119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_126 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.1286

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

4V8P|1|A1|A|3092
4V8P|1|A1|U|3093
4V8P|1|A1|U|3094
4V8P|1|A1|A|3095
4V8P|1|A1|U|3096
*
4V8P|1|A1|A|3116
4V8P|1|A1|G|3117
4V8P|1|A1|A|3118
4V8P|1|A1|A|3119
4V8P|1|A1|U|3120

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain BE

60S RIBOSOMAL PROTEIN L9

Chain BI

60S RIBOSOMAL PROTEIN L13A