IL_4V8P_505
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUCAUCAG*CUGAAG
- Length
- 14 nucleotides
- Bulged bases
- 4V8P|1|H1|U|1218, 4V8P|1|H1|C|1219, 4V8P|1|H1|G|1343, 4V8P|1|H1|A|1345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_505 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1794
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|H1|C|1214
4V8P|1|H1|U|1215
4V8P|1|H1|C|1216
4V8P|1|H1|A|1217
4V8P|1|H1|U|1218
4V8P|1|H1|C|1219
4V8P|1|H1|A|1220
4V8P|1|H1|G|1221
*
4V8P|1|H1|C|1341
4V8P|1|H1|U|1342
4V8P|1|H1|G|1343
4V8P|1|H1|A|1344
4V8P|1|H1|A|1345
4V8P|1|H1|G|1346
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GE
- 60S RIBOSOMAL PROTEIN L9
- Chain GI
- 60S RIBOSOMAL PROTEIN L13A
- Chain HF
- RPL14
- Chain HK
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
- Chain HX
- RPL18A
Coloring options: