IL_4V8P_512
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUAGUAG*CGAACC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_512 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.073
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V8P|1|H1|G|1470
4V8P|1|H1|U|1471
4V8P|1|H1|A|1472
4V8P|1|H1|G|1473
4V8P|1|H1|U|1474
4V8P|1|H1|A|1475
4V8P|1|H1|G|1476
*
4V8P|1|H1|C|2349
4V8P|1|H1|G|2350
4V8P|1|H1|A|2351
4V8P|1|H1|A|2352
4V8P|1|H1|C|2353
4V8P|1|H1|C|2354
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GB
- RIBOSOMAL PROTEIN L3
- Chain GC
- RPL4
- Chain GQ
- RPL17
Coloring options: