IL_4V8P_515
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUAAG*CAAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4V8P|1|H1|A|1613, 4V8P|1|H1|A|1614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_515 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.1325
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V8P|1|H1|C|1558
4V8P|1|H1|U|1559
4V8P|1|H1|A|1560
4V8P|1|H1|A|1561
4V8P|1|H1|G|1562
*
4V8P|1|H1|C|1610
4V8P|1|H1|A|1611
4V8P|1|H1|A|1612
4V8P|1|H1|A|1613
4V8P|1|H1|A|1614
4V8P|1|H1|G|1615
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GA
- RPL8
- Chain HA
- RIBOSOMAL PROTEIN L37
- Chain HB
- RPL39
- Chain HL
- RPL34
Coloring options: