IL_4V8P_567

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

4V8P|1|H1|C|3081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_567 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.3914

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V8P|1|H1|U|3036
4V8P|1|H1|A|3037
4V8P|1|H1|A|3038
4V8P|1|H1|U|3039
4V8P|1|H1|U|3040
*
4V8P|1|H1|A|3080
4V8P|1|H1|C|3081
4V8P|1|H1|C|3082
4V8P|1|H1|A|3083

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GB

RIBOSOMAL PROTEIN L3

Chain GJ

RPL23

Chain GT

RPL24