IL_4V8P_577

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUA*UUCAGC

Length

9 nucleotides

Bulged bases

4V8P|1|H1|G|3333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_577 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.2669

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V8P|1|H1|G|3286
4V8P|1|H1|U|3287
4V8P|1|H1|A|3288
*
4V8P|1|H1|U|3329
4V8P|1|H1|U|3330
4V8P|1|H1|C|3331
4V8P|1|H1|A|3332
4V8P|1|H1|G|3333
4V8P|1|H1|C|3334

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GB

RIBOSOMAL PROTEIN L3

Chain GT

RPL24

Chain GW

60S RIBOSOMAL PROTEIN L31