IL_4V8T_056
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 4V8T|1|5|U|1191, 4V8T|1|5|C|1192, 4V8T|1|5|C|1316, 4V8T|1|5|A|1318
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_056 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.0638
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|C|1187
4V8T|1|5|U|1188
4V8T|1|5|C|1189
4V8T|1|5|A|1190
4V8T|1|5|U|1191
4V8T|1|5|C|1192
4V8T|1|5|A|1193
4V8T|1|5|G|1194
*
4V8T|1|5|C|1314
4V8T|1|5|U|1315
4V8T|1|5|C|1316
4V8T|1|5|A|1317
4V8T|1|5|A|1318
4V8T|1|5|G|1319
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain H
- 60S RIBOSOMAL PROTEIN L9-A
- Chain M
- 60S RIBOSOMAL PROTEIN L14-A
- Chain O
- 60S RIBOSOMAL PROTEIN L16-A
- Chain S
- 60S RIBOSOMAL PROTEIN L20-A
- Chain m
- 60S RIBOSOMAL PROTEIN L40
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